PROSSECO
PROSSECO: Understanding Recovery from Lyme Disease
Prospective Study of Symptoms, Events, and Clinical Outcomes with Lyme Disease
What We’re Studying
The PROSSECO study, funded by the National Institutes of Health (NIH), follows people from the moment they’re diagnosed with Lyme disease. By following participants from day one, we’re learning what is associated with faster recovery from the infection.
Why This Matters
Most people feel better within months after antibiotic treatment. But for an estimated 10-15% of patients (range 5-35%), symptoms like fatigue, pain, or brain fog can linger for greater than 6 months or even years. This condition is sometimes called “Chronic Lyme Disease,” though doctors use the medical term Post-Treatment Lyme Disease Syndrome (PTLDS).
Why does this happen? We don’t know. Possibilities that have been raised include:
- Residual bacteria or bacterial components that keep the immune system activated
- Reactivation of dormant viruses
- Changes in the body’s microbiome
- Autoimmune responses
- Differences in bacterial strains or human genetics

How the Study Works
We enroll patients at their earliest sign of Lyme disease – usually when the telltale erythema migrans rash appears. This timing is crucial because it helps us track symptoms that are linked to the development of Lyme disease, and not other conditions with similar symptoms like Long COVID.
What we collect:
- Skin, blood, urine, and stool samples
- Samples are collected multiple times over 15 months
Information about patient’s symptoms and course to recovery
What we’re looking for:
Differences between people who recover quickly and those who don’t including but not limited to the following areas:
- Genetic and functional differences between infecting strains of bacteria
- Presence of the Lyme bacteria or their components
- Co-infections with other bacteria, viruses and parasites
- Markers of inflammation and immune activation
- Genetic encoded differences in how individuals respond to infection
- Autoimmune markers such as autoantibody production and development of autoreactive immune cells
- Microbiome composition
Beyond Acute Lyme Disease: Cross-Sectional Community Cohort
PROSSECO also includes a Cross-Sectional Community Cohort-a study of people living in Lyme-endemic areas who provide samples at a single point in time. This Community Cohort includes people who may have:
- A history of Lyme disease with ongoing symptoms (PTLDS)
- Suspected past Lyme exposure
- No previous Lyme disease (for comparison)
By comparing samples from the Community Cohort with our acute Lyme disease participants, we hope to develop diagnostic tests that can identify PTLDS and predict recovery outcomes, even for people who weren’t followed from their initial infection.
Our Teams
PROSSECO is a collaboration between: • Tufts University School of Medicine • Tufts Medicine • Mass General Brigham • MaineHealth Our goal is to enroll up to 1,200 patients with acute Lyme disease and 2,500 people in the Community Cohort across approximately 20 sites in New England over the next 5 years.




Follow this webpage for progress on PROSSECO
Acute Lyme Cohort (newly diagnosed)
Enrolled to Date:
Samples Collected:
Serum
Plasma
Whole blood
PBMCs
RNA-stabilized blood
Urine
Skin biopsy
Capillary/Tasso
Stool/rectal swab
Community Cohort (Lyme-prevalent areas)
Enrolled to Date:
Blood Samples Collected:
Last updated 11/17/2025




